Seska left the ship around stardate 48658.2 (in State of Flux (1995)) but, according to Torres, Seska modified the holo-program on stardate 48671.
When Paris plays through the holonovel, his uniform is change to operations gold and his rank insignia is changed to a single pip, as his role was an ensign in security division. When Torres played through the same events in the same role, her provisional rank insignia was unaltered (her uniform was already gold, as she is in engineering).
At about the 20 minute mark, Tom is seen on the bridge of Voyager and also as pilot of the runabout, at the same time.
However, this is a holonovel. In this iteration, the real Tom is playing a mutineer; the Tom on the shuttle is a holodeck character. A moment later, at about 22 minutes, the holodeck character comes aboard Voyager and the two come face to face.
However, this is a holonovel. In this iteration, the real Tom is playing a mutineer; the Tom on the shuttle is a holodeck character. A moment later, at about 22 minutes, the holodeck character comes aboard Voyager and the two come face to face.
When Tuvok accessed the narrative parameters file, Ensign Kim stated that the com system went down. However when Janeway and Torres are in Engineering Torres calls Kim over the com system. If the com was down she shouldn't have been able to call him at all if it was down.
When the holographic Lieutenant Paris meets the real Lieutenant Paris the phaser that the holographic one is holding is completely pointing over his shoulder as if he's not aiming at the real one. However when the camera shifts to the holographic one the phaser is pointed at the real Paris' neck.